= !MadAnalysis 5 physics analysis database =

This page contains a collection of LHC analyses that have been implemented in the !MadAnalysis 5 framework (in the expert mode) described in [http://arxiv.org/abs/1405.3982 arXiv:1405.3982]] and [http://arxiv.org/abs/1407.3278 arXiv:1407.3278]]. For each analysis, a commented C++ code is available for download, provided together with information on the analysis and references to relevant publications. A careful validation of each implementation is also provided. 

In order to use these files, you need !MadAnalysis 5 version 1.1.11 or higher, as well as our modified version of Delphes, which can be installed with the command 
{{{
 install delphesMA5tune
}}}
within !MadAnalysis 5. If you have an older version of !MadAnalysis 5, first update it to the latest one. Also, beware that the standard Delphes and delphesMA5tune cannot be used simultaneously!!

In order to use the code, you first need to create a working directory (that will be called ''PAD''). You can also optionally install a couple of python tools that allows for limit and efficiency map extractions. However, in order to have those tools available in the ''PAD'' directory, they need to be installed prior to the creation of the working directory. You need to start !MadAnalysis 5 as
{{{
 ./bin/ma5 -R
}}}
If you want to use our scripts for limit setting and efficiency maps (see below), next type 
{{{
 install RecastingTools
}}}
For creating a working directory that contains all the analyses that are publicly available, then type 
{{{
install PAD
}}}


**New analyses** (within the PAD or separately) can be added by running the script newAnalyzer.py (located in !Build/SampleAnalyzer), passing as an argument the name of the analysis of interest. For instance,
{{{
 python newAnalyzer.py cms_sus_14_001
}}}
will create and modify the necessary files for adding the analysis named cms_sus_14_001. In particular, a pair of header and source C++ files cms_sus_14_001.cpp and cms_sus_14_001.h are now available in the subdirectory !Build/SampleAnalyzer/User/Analyzer. You can now either implement the analysis yourself or replace the newly created files with those shared by somebody else (or downloaded from the list below in case you do not use the automatic PAD installation from above).

After execution of an analysis, **exclusion under the CLs prescription** can be computed with the Python code [http://madanalysis.irmp.ucl.ac.be/attachment/wiki/PhysicsAnalysisDatabase/exclusion_CLs.py exclusion_CLs.py] Note that it requires [http://www.scipy.org/ SciPy] to be installed.
The path to the working directory of interest has to be provided in the variable analysis_path in the beginning of the code.
If you have done ''install !RecastingTools'', then a local copy of [http://madanalysis.irmp.ucl.ac.be/attachment/wiki/PhysicsAnalysisDatabase/exclusion_CLs.py exclusion_CLs.py] is available in every new working directory. The code is called as
{{{
 ./exclusion_CLs.py analysis_name mypoint.txt [run_number] [cross section in pb]
}}}
The exclusion results will be printed on the screen and in an output file located in the directory mypoint.txt/ of the output of the analysis. Details are given in [http://arxiv.org/abs/1407.3278 arXiv:1407.3278].

In order to get the **efficiency map** associated with a given benchmark point, the [http://madanalysis.irmp.ucl.ac.be/attachment/wiki/PhysicsAnalysisDatabase/getmaps.py getmaps.py] script can be run
{{{
 ./getmaps.py mypoint.txt
}}}
This creates one file for each analysis that has been executed, this file containing the efficiency associated with each of the signal regions of the relevant analysis. 
(We stress that in order to have these scripts available, they must be installed before creating the working directory.)

''We strongly encourage users to publish their re-implemented LHC analyses via Inspire.'' This way they not only become part of the public database, rendering them as useful as possible to the community, but they also become individually searchable and citable. 

For any information on the implementation of an analysis, on the database or on the expert mode of the program, please visit the 'Answers' section of our [https://launchpad.net/madanalysis5 launchpad page].

== Available Analyses ==

**'' !! please properly cite all the re-implementation codes you are using (see Inspire citation entry) !! **''

=== ATLAS analyses, 8 TeV ===
|| '''Analysis''' || ''' Short Description''' || '''Implemented by''' || '''Code''' || '''Validation note''' || '''Status''' ||
|| [https://atlas.web.cern.ch/Atlas/GROUPS/PHYSICS/PAPERS/SUSY-2013-05/ ATLAS-SUSY-2013-05] (published) || stop/sbottom search: 0 leptons + 2 b-jets || G. Chalons || [http://inspirehep.net/record/1325001/ Inspire] ||[http://madanalysis.irmp.ucl.ac.be/attachment/wiki/PhysicsAnalysisDatabase/ma5_validation_ATLAS-SUSY-13-05.pdf PDF] [http://madanalysis.irmp.ucl.ac.be/attachment/wiki/PhysicsAnalysisDatabase/plots.tgz (figures)]|| done ||
|| [https://atlas.web.cern.ch/Atlas/GROUPS/PHYSICS/PAPERS/SUSY-2013-11/ ATLAS-SUSY-2013-11] (published) || EWK-inos, 2 leptons + MET || B. Dumont || [http://inspirehep.net/record/1326686/ Inspire] || [http://madanalysis.irmp.ucl.ac.be/attachment/wiki/PhysicsAnalysisDatabase/ma5_validation_ATLAS-SUSY-2013-11_v2.pdf PDF] [https://madanalysis.irmp.ucl.ac.be/attachment/wiki/PhysicsAnalysisDatabase/ma5_validation_ATLAS-SUSY-2013-11_v2.tar.gz (source)] || done ||
|| [https://atlas.web.cern.ch/Atlas/GROUPS/PHYSICS/PAPERS/HIGG-2013-03/ ATLAS-HIGG-2013-03] (published) || ZH->ll+invisible || B. Dumont || [http://inspirehep.net/record/1347081/ Inspire]  || [http://madanalysis.irmp.ucl.ac.be/attachment/wiki/PhysicsAnalysisDatabase/ma5_validation_ATLAS-HIGG-2013-03.pdf PDF] [http://madanalysis.irmp.ucl.ac.be/attachment/wiki/PhysicsAnalysisDatabase/ma5_validation_ATLAS-HIGG-2013-03.tar.gz (source)] || done ||
|| [https://atlas.web.cern.ch/Atlas/GROUPS/PHYSICS/PAPERS/EXOT-2014-04/ ATLAS-EXOT-2014-06] (published) || mono-photons + MET || D. Barducci || t.b.a  || [http://madanalysis.irmp.ucl.ac.be/attachment/wiki/PhysicsAnalysisDatabase/ma5_validation_ATLAS-EXOT-2014-06.pdf PDF] || DOI to be assigned ||

[http://madanalysis.irmp.ucl.ac.be/raw-attachment/wiki/PhysicsAnalysisDatabase/delphesMA5tune_card_ATLAS_05.tcl Delphes card] for ATLAS-SUSY-2013-05 [[BR]]
[http://madanalysis.irmp.ucl.ac.be/raw-attachment/wiki/PhysicsAnalysisDatabase/delphesMA5tune_card_ATLAS_dileptonSUSY.tcl Delphes card] for ATLAS-SUSY-2013-11

=== CMS analyses, 8 TeV ===

|| '''Analysis''' || ''' Short Description''' || '''Implemented by''' || '''Code''' || '''Validation note''' || '''Status''' ||
|| [https://twiki.cern.ch/twiki/bin/view/CMSPublic/PhysicsResultsSUS13011 CMS-SUS-13-011] (published) || stop search in the single lepton mode || B. Dumont, B. Fuks, C.  Wymant || [http://inspirehep.net/record/1301484/ Inspire] [1] [[BR]] || [http://madanalysis.irmp.ucl.ac.be/attachment/wiki/PhysicsAnalysisDatabase/ma5_validation_CMS-SUS-13-011.pdf PDF] [http://madanalysis.irmp.ucl.ac.be/attachment/wiki/PhysicsAnalysisDatabase/ma5_validation_CMS-SUS-13-011.tar.gz (source)] ||  done ||
|| [https://twiki.cern.ch/twiki/bin/view/CMSPublic/PhysicsResultsSUS13012 CMS-SUS-13-012] (published) || gluino/squark search in jet multiplicity and missing energy || S. Bein, D. Sengupta ||  [http://inspirehep.net/record/1305458/ Inspire] [[BR]] || [http://madanalysis.irmp.ucl.ac.be/attachment/wiki/PhysicsAnalysisDatabase/ma5_validation_CMS-SUS-13-012.pdf PDF] [http://madanalysis.irmp.ucl.ac.be/attachment/wiki/PhysicsAnalysisDatabase/cms_sus_13_012_note.zip (source)] || done ||
|| [https://twiki.cern.ch/twiki/bin/view/CMSPublic/PhysicsResultsSUS13016 CMS-SUS-13-016]  (PAS) || search for gluinos using OS dileptons and b-jets || D. Sengupta, S. Kulkarni || [http://inspirehep.net/record/1305194 Inspire] || [http://madanalysis.irmp.ucl.ac.be/attachment/wiki/PhysicsAnalysisDatabase/ma5_validation_CMS-SUS-13-016.pdf PDF]​ [http://madanalysis.irmp.ucl.ac.be/attachment/wiki/PhysicsAnalysisDatabase/cms_sus_13_016_note.tar.gz (source)] || done ||

[http://madanalysis.irmp.ucl.ac.be/attachment/wiki/PhysicsAnalysisDatabase/delphesMA5tune_card_CMS_SUSY.tcl Delphes card] for these analyses

[1] This analysis requires MINUIT libraries. Therefore, the line
{{{
 LIBFLAGS += -lMinuit
}}}
should be added to the Makefile of the Build/ directory before compilation.